This is a beta version.

We are working on improving OneTwoTree for enhanced flexibility and a better user interface.
If you run into problems please email evolseq@tauex.tau.ac.il and specify the job ID.
Thank you!

The following table contains all future improvements and issues we are aware of and intend to fix.
If you encounter any other malfunction please send us an Email to evolseq@tauex.tau.ac.il.

Issue#	topic	description	Status
1	User sequences input	Enable users to add their own sequences to the analysis	Open
2	Name resolution databases	Add Catalog of life to be one of the DB options for Name resolution	Open
3	Stand alone version	Create a stand-alone version of OneTwoTree.	V 1.1
4	Running time improvment	Improve running time of outgroup selection	Open
5	Input/ouput taxa statistics	Add statistics of input/output (user inputed vs final data)	Open
6	Multiple outgroup	Add user option to select multiple outgroups	Open
7	Update Genbank	Update local database from genbank (NCBI)	Last Updated: Sep 2019
8	Remove rogue taxa using RougeNaRok	Add an option to remove form the tree species whose position is highly uncertain	Open
10	ITS clusters included in Outgroup selection process	Bug fixed. ITS clusters are now part of the outgroup selection process	V 1.2
11	Bug: OTT failed when ITS1 had only one sequence.	Bug was fixed.	V 1.2
12	Bug: OTT failed when job name included '-'.	Bug was fixed.	V 1.2
13	Bug: Orthomcl clustering with no results (no clusters found) caused failure	Bug was fixed.	V 1.2
14	ITS clusteing	Perfrom clustering also on ITS sequences, rather than assigning them to ITS clusters based on the textual description in the sequence header.	V 1.2