This is a beta version.
We are working on improving CLUMPAK for enhanced flexibility and a better user interface. If you run into problems please email evolseq@tauex.tau.ac.il and specify the job ID.
If you haven't received any results within a few hours, please contact us and re-submit. See Known Issues. Thank you!
basic_result_files_examples.zip
The following zip file can be used to test CLUMPAK's "Main pipeline" feature:
Structure_toy_data.zip
If you are using Structure_toy_data.zip for trying our Main pipeline, you can use the following file as a label file:
toy_data_labels.txt
The following zip file can be used to test CLUMPAK's "Main pipeline" feature in ADMIXTURE format:
Admixture_toy_data.zip
If you are using the ADMIXTURE format, you can use the following file as a populations file:toy_data_populations_file.txt
The following zip file can be used to try our "Distruct for many K's" feature:
Structure_distuct_4_many_Ks_input.zip
If you are using Structure_distuct_4_many_Ks_input.zip for trying our "Distruct for many K's" feature, you can use the following file as a label file:
distruct_labels_data.txt
The following zip file can be used to test CLUMPAK's "Distruct for many K's" feature in ADMIXTURE format:
Admixture_distuct_4_many_Ks_input.zip
If you are using the ADMIXTURE format, you can use the following file as a populations file:
toy_data_populations_file.txt
The following two files (along with toy_data_labels.txt) can be used to try our "Compare different programs" feature:
Structure_K6_model1.zip
Structure_K6_model2.zip
The following zip file can be used to test CLUMPAK's "Best K by Evanno" feature:
Structure_toy_data.zip
The following file can be used to run Evanno with the log probability table file format:
toy_data_log_prob_file.txt
Populations file: toy_data_populations_file.txt
Labels file: toy_data_labels.txt
Colors file: colors_file.txt
Drawparams file: drawparams.txt
A sample of 399 individuals from 16 Jewish and non-Jewish populations at 678 microsatellite markers: